Juicebox
  • Welcome!
  • Background
  • Juicebox (Web)
  • Loading Annotations (Web)
  • Comparing Maps (Web)
  • Sharing URLs (Web)
  • Hosting with Dropbox/Drive/GEO
  • Visualize from ENCODE website
  • Practice: Interactive Figure
  • Juicebox (Desktop)
  • Loading Annotations (Desktop)
  • Comparing Maps (Desktop)
  • Drawing Custom Annotations (Desktop)
  • Additional Resources
  • Bonus: Running Juicer Tools Analysis
  • Bonus: Accessing Raw Data for Analysis
  • Bonus: Assembly Tools (Desktop)
  • Bonus: Submapping (Desktop)
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Welcome!

NextBackground

Last updated 4 years ago

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Welcome to the Juicebox tutorial! We are going to explore in depth examples of the kinds of analyses and insights you can get by visualizing 3D genomic interactions with Juicebox and Juicebox.JS.

Download Juicebox from

Make sure you have Java installed on your system

Juicebox.JS can be used directly online at

This walkthrough was initially developed for the Exploring ENCODE Hi-C Data with Juicebox and Juicebox.JS Workshop at the

https://github.com/aidenlab/Juicebox/wiki/Download
https://aidenlab.org/juicebox
ENCODE 2019: Research Applications and Users Meeting