> For the complete documentation index, see [llms.txt](https://aidenlab.gitbook.io/juicebox/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://aidenlab.gitbook.io/juicebox/submapping.md).

# Bonus: Submapping (Desktop)

Juicebox can visualize discontinuous regions from across the genome by stitching them together, with resolution, normalization, color scale, and even VS mode being preserved! 

![Superenhancer clique with cohesin degradation from Rao et al. Cell 2017](/files/-LjKjcAc-cArwDtYsrXg)

Detailed walkthrough available at <https://github.com/aidenlab/Juicebox/wiki/Submapping>

{% embed url="<https://github.com/aidenlab/Juicebox/wiki/Submapping>" %}