Juicebox
  • Welcome!
  • Background
  • Juicebox (Web)
  • Loading Annotations (Web)
  • Comparing Maps (Web)
  • Sharing URLs (Web)
  • Hosting with Dropbox/Drive/GEO
  • Visualize from ENCODE website
  • Practice: Interactive Figure
  • Juicebox (Desktop)
  • Loading Annotations (Desktop)
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  • Drawing Custom Annotations (Desktop)
  • Additional Resources
  • Bonus: Running Juicer Tools Analysis
  • Bonus: Accessing Raw Data for Analysis
  • Bonus: Assembly Tools (Desktop)
  • Bonus: Submapping (Desktop)
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Bonus: Submapping (Desktop)

Juicebox can visualize discontinuous regions from across the genome by stitching them together, with resolution, normalization, color scale, and even VS mode being preserved!

Superenhancer clique with cohesin degradation from Rao et al. Cell 2017

Detailed walkthrough available at https://github.com/aidenlab/Juicebox/wiki/Submapping

LogoSubmapping · aidenlab/Juicebox WikiGitHub

PreviousBonus: Assembly Tools (Desktop)

Last updated 5 years ago

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