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Bonus: Accessing Raw Data for Analysis

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Last updated 3 years ago

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The ENCODE suite of tools for accessing and analyzing Hi-C Data includes the Straw API for streaming Hi-C data without needing to download any files. Straw currently supports Python, C/C++, R, MATLAB, and JavaScript.

To access a sample Jupyter notebook with code for running straw, go to:

More information about the Straw API can be found at (C++/Python/R/MATLAB), (Java), and (JavaScript).

https://colab.research.google.com/drive/1-GG-n-p9nZ7Be82UVJG7n3Q_wQ9IeuFN
https://github.com/aidenlab/straw
https://github.com/aidenlab/java-straw
https://github.com/igvteam/hic-straw