Bonus: Accessing Raw Data for Analysis
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The ENCODE suite of tools for accessing and analyzing Hi-C Data includes the Straw API for streaming Hi-C data without needing to download any files. Straw currently supports Python, C/C++, R, MATLAB, and JavaScript.
To access a sample Jupyter notebook with code for running straw, go to:
More information about the Straw API can be found at (C++/Python/R/MATLAB), (Java), and (JavaScript).