Juicebox
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  • Bonus: Running Juicer Tools Analysis
  • Bonus: Accessing Raw Data for Analysis
  • Bonus: Assembly Tools (Desktop)
  • Bonus: Submapping (Desktop)
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Bonus: Accessing Raw Data for Analysis

The ENCODE suite of tools for accessing and analyzing Hi-C Data includes the Straw API for streaming Hi-C data without needing to download any files. Straw currently supports Python, C/C++, R, MATLAB, and JavaScript.

To access a sample Jupyter notebook with code for running straw, go to: https://colab.research.google.com/drive/1-GG-n-p9nZ7Be82UVJG7n3Q_wQ9IeuFN

More information about the Straw API can be found at https://github.com/aidenlab/straw (C++/Python/R/MATLAB), https://github.com/aidenlab/java-straw (Java), and https://github.com/igvteam/hic-straw (JavaScript).

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Last updated 3 years ago

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