# Additional Resources

There are many other features to explore in Juicebox Desktop! Right click in the heat map to see some of them. Within the `File` menu, you can look at `Dataset Metrics` or export the current data shown on the screen. The `View` menu gives some options for looking at the data, including the [Submapping](https://aidenlab.gitbook.io/juicebox/submapping) function, changing the heat map color, exporting the map for a figure, and more. Within the `Annotations` dialog, you can load your own 1D and 2D annotations. The `Bookmarks` menu allows you to save a location to quickly go back to it between sessions. The `Assembly` menu is for using [`Juicebox for Assembly Tools`](https://aidenlab.gitbook.io/juicebox/assembly-tools) to correct genome assemblies.

### Post any questions to our forum! <https://aidenlab.org/forum.html>

{% embed url="<https://aidenlab.org/forum.html>" %}

Juicebox (Desktop) code and documentation: <https://github.com/aidenlab/juicebox/wiki>

{% embed url="<https://github.com/aidenlab/juicebox/wiki>" %}

Juicebox (Web) code and documentation: <https://igvteam.github.io/juicebox.js>

{% embed url="<https://igvteam.github.io/juicebox.js/>" %}

Embedding your own Juicebox: <https://igvteam.github.io/juicebox.js/docs/embedding>

{% embed url="<https://igvteam.github.io/juicebox.js/docs/embedding>" %}

| Papers                                                                                                                                                                                                                          |
| ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| [Comprehensive mapping of long-range interactions reveals folding principles of the human genome. *Science* 326 (2009).](https://science.sciencemag.org/content/326/5950/289)                                                   |
| [A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014 Dec 18;159(7):1665-80.](https://www.cell.com/abstract/S0092-8674\(14\)01497-4)                                         |
| [Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom. Cell Systems. 2016 Jul 27;3(1):99-101.](https://www.cell.com/cell-systems/pdf/S2405-4712\(15\)00054-X.pdf)                                 |
| [Juicebox.js provides a cloud-based visualization system for Hi-C data. Cell Systems. 2018 Feb 28;6(2):256-8.](https://www.cell.com/fulltext/S2405-4712\(18\)30001-2)                                                           |
| [De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science. 2017 Apr 7;356(6333):92-5.](https://science.sciencemag.org/content/356/6333/92.abstract)                                  |
| [The Juicebox Assembly Tools module facilitates de novo assembly of mammalian genomes with chromosome-length scaffolds for under $1000. bioRxiv. 2018 Jan 1:254797.](https://www.biorxiv.org/content/10.1101/254797v1.abstract) |