Additional Resources

There are many other features to explore in Juicebox Desktop! Right click in the heat map to see some of them. Within the File menu, you can look at Dataset Metrics or export the current data shown on the screen. The View menu gives some options for looking at the data, including the Submapping function, changing the heat map color, exporting the map for a figure, and more. Within the Annotations dialog, you can load your own 1D and 2D annotations. The Bookmarks menu allows you to save a location to quickly go back to it between sessions. The Assembly menu is for using Juicebox for Assembly Tools to correct genome assemblies.

Post any questions to our forum! https://aidenlab.org/forum.html

Juicebox (Desktop) code and documentation: https://github.com/aidenlab/juicebox/wiki

Juicebox (Web) code and documentation: https://igvteam.github.io/juicebox.js

Embedding your own Juicebox: https://igvteam.github.io/juicebox.js/docs/embedding