> For the complete documentation index, see [llms.txt](https://aidenlab.gitbook.io/juicebox/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://aidenlab.gitbook.io/juicebox/bonus-running-juicer-tools-analysis.md).

# Bonus: Running Juicer Tools Analysis

The ENCODE suite of tools for analyzing Hi-C Data includes Juicer Tools for finding chromatin loops and contact domains in Hi-C data.

To access a sample Jupyter notebook with code for running Juicer Tools, go to: [https://colab.research.google.com/drive/1XelZowBWxBghSyS11rvs90Zmazsj\_HPh](https://colab.research.google.com/drive/1XelZowBWxBghSyS11rvs90Zmazsj_HPh?usp=sharing)

More information about Juicer Tools can be found at <https://github.com/aidenlab/juicer/wiki>.