Bonus: Running Juicer Tools Analysis

The ENCODE suite of tools for analyzing Hi-C Data includes Juicer Tools for finding chromatin loops and contact domains in Hi-C data.

To access a sample Jupyter notebook with code for running Juicer Tools, go to: https://colab.research.google.com/drive/1XelZowBWxBghSyS11rvs90Zmazsj_HPh

More information about Juicer Tools can be found at https://github.com/aidenlab/juicer/wiki.